Kuqa Airport offers nonstop service to 19 destinations, served by 8 airlines.
| Destination | Code | Country | Distance | Duration | Airlines |
|---|---|---|---|---|---|
| Aksu | AKU | China | 230 km | 0h 40m | G5, EU |
| Korla | KRL | China | 263 km | 0h 48m | G5 |
| Yining | YIN | China | 282 km | 0h 50m | G5, EU |
| Bole | BPL | China | 357 km | 0h 50m | G5 |
| Shihezi | SHF | China | 367 km | 1h 0m | G5 |
| Urumqi | URC | China | 439 km | 1h 5m | CZ, GS |
| Qiemo | IQM | China | 452 km | 1h 10m | EU |
| Karamay | KRY | China | 459 km | 1h 15m | G5, EU |
| Tacheng | TCG | China | 551 km | 1h 25m | EU |
| Hotan | HTN | China | 584 km | 1h 20m | G5 |
| Qitai | JBK | China | 600 km | 1h 10m | G5 |
| Shache | QSZ | China | 636 km | 1h 15m | EU, G5 |
| Kashi | KHG | China | 637 km | 1h 18m | G5, EU |
| Altay | AAT | China | 782 km | 1h 30m | G5 |
| Hami | HMI | China | 869 km | 1h 40m | G5 |
| Lanzhou | LHW | China | 1,870 km | 3h 10m | QW |
| Chengdu | TFU | China | 2,300 km | 3h 50m | CA, 3U |
| Xian | XIY | China | 2,390 km | 3h 40m | MU |
| Zhengzhou | CGO | China | 2,803 km | 4h 25m | QW |