Chania International Airport offers nonstop service to 71 destinations, served by 29 airlines.
| Destination | Code | Country | Distance | Duration | Airlines |
|---|---|---|---|---|---|
| Athens | ATH | Greece | 266 km | 0h 50m | FR, GQ, A3 |
| Rhodes | RHO | Greece | 368 km | 1h 8m | A3, NO |
| Thessaloniki | SKG | Greece | 562 km | 1h 20m | FR, A3 |
| Paphos | PFO | Cyprus | 766 km | 1h 30m | FR |
| Sofia | SOF | Bulgaria | 796 km | 1h 35m | FR |
| Malta | MLA | Malta | 873 km | 1h 45m | FR |
| Bari | BRI | Italy | 894 km | 1h 50m | FR |
| Bucharest | OTP | Romania | 1,016 km | 1h 55m | FR, A2 |
| Naples | NAP | Italy | 1,045 km | 2h 0m | FR |
| Tel Aviv-Yafo | TLV | Israel | 1,067 km | 1h 45m | |
| Belgrade | BEG | Republic of Serbia | 1,080 km | 2h 3m | JU, W6 |
| Timisoara | TSR | Romania | 1,164 km | 2h 10m | A2 |
| Rome | FCO | Italy | 1,244 km | 2h 20m | FR, W4 |
| Budapest | BUD | Hungary | 1,381 km | 2h 20m | FR |
| Bologna | BLQ | Italy | 1,479 km | 2h 30m | FR |
| Pisa | PSA | Italy | 1,484 km | 2h 35m | FR |
| Venice | TSF | Italy | 1,507 km | 2h 35m | FR |
| Vienna | VIE | Austria | 1,530 km | 2h 30m | OS, FR |
| Krakow | KRK | Poland | 1,652 km | 2h 45m | FR |
| Milan | BGY | Italy | 1,656 km | 2h 45m | FR |
| Nice | NCE | France | 1,706 km | 2h 50m | U2 |
| Milan | MXP | Italy | 1,715 km | 2h 50m | NO, U2 |
| Munich | MUC | Germany | 1,748 km | 2h 50m | DE, 4Y |
| Memmingen | FMM | Germany | 1,796 km | 2h 55m | FR |
| Prague | PRG | Czech Republic | 1,804 km | 2h 55m | QS |
| Wroclaw | WRO | Poland | 1,824 km | 3h 0m | FR |
| Marseille | MRS | France | 1,842 km | 3h 5m | FR |
| Zurich | ZRH | Switzerland | 1,848 km | 3h 0m | WK |
| Warsaw | WAW | Poland | 1,864 km | 3h 0m | W4 |
| Nuremberg | NUE | Germany | 1,879 km | 3h 0m | FR |
| Modlin | WMI | Poland | 1,899 km | 3h 0m | FR |
| Stuttgart | STR | Germany | 1,906 km | 3h 0m | EW |
| Basel, Switzerland/Mulhouse | BSL | France | 1,919 km | 3h 5m | U2 |
| Geneva | GVA | Switzerland | 1,920 km | 3h 13m | U2 |
| Lyon | LYS | France | 1,961 km | 3h 15m | U2, TO |
| Poznan | POZ | Poland | 1,962 km | 3h 5m | FR |
| Leipzig/Halle | LEJ | Germany | 2,004 km | 3h 5m | DI |
| Frankfurt | FRA | Germany | 2,045 km | 3h 20m | DE, 4Y |
| Berlin | BER | Germany | 2,050 km | 3h 15m | U2 |
| Hahn | HHN | Germany | 2,104 km | 3h 20m | FR |
| Luxembourg | LUX | Luxembourg | 2,137 km | 3h 20m | LG |
| Gdansk | GDN | Poland | 2,139 km | 3h 20m | FR |
| Dusseldorf | DUS | Germany | 2,232 km | 3h 25m | DE, EW |
| Dusseldorf | NRN | Germany | 2,288 km | 3h 35m | FR |
| Hamburg | HAM | Germany | 2,292 km | 3h 25m | DE, EW, DI |
| Brussels | CRL | Belgium | 2,293 km | 3h 40m | FR |
| Paris | ORY | France | 2,306 km | 3h 45m | TO |
| Brussels | BRU | Belgium | 2,322 km | 3h 50m | SN, TB |
| Copenhagen | CPH | Denmark | 2,398 km | 3h 40m | D8, SK |
| Amsterdam | AMS | Netherlands | 2,411 km | 3h 50m | HV, U2 |
| Ostend | OST | Belgium | 2,432 km | 4h 10m | TB |
| Nantes | NTE | France | 2,493 km | 4h 0m | U2 |
| Billund | BLL | Denmark | 2,519 km | 3h 45m | D8 |
| London | LGW | United Kingdom | 2,603 km | 4h 10m | U2, BA |
| London | STN | United Kingdom | 2,623 km | 4h 5m | FR, LS |
| London | LHR | United Kingdom | 2,638 km | 4h 20m | BA |
| London | LTN | United Kingdom | 2,659 km | 4h 10m | U2, W9 |
| Bournemouth | BOH | United Kingdom | 2,682 km | 4h 10m | FR |
| Stockholm | ARN | Sweden | 2,718 km | 4h 0m | SK, D8, FR |
| Helsinki | HEL | Finland | 2,755 km | 4h 0m | AY, D8 |
| Bristol | BRS | United Kingdom | 2,769 km | 4h 15m | LS, U2 |
| Birmingham | BHX | United Kingdom | 2,771 km | 4h 20m | FR, LS |
| Leicestershire | EMA | United Kingdom | 2,771 km | 4h 18m | FR, LS |
| Leeds | LBA | United Kingdom | 2,855 km | 4h 25m | FR, LS |
| Manchester | MAN | United Kingdom | 2,857 km | 4h 25m | FR, LS, U2, RK |
| Oslo | OSL | Norway | 2,897 km | 4h 10m | DY, SK |
| Newcastle | NCL | United Kingdom | 2,934 km | 4h 25m | FR, LS |
| Bergen | BGO | Norway | 3,068 km | 4h 25m | DY |
| Dublin | DUB | Ireland | 3,088 km | 4h 40m | FR |
| Glasgow | GLA | United Kingdom | 3,127 km | 4h 45m | U2 |
| Reykjavik | KEF | Iceland | 4,447 km | 6h 10m | NO |