Tomsk Bogashevo Airport offers nonstop service to 16 destinations, served by 8 airlines.
| Destination | Code | Country | Distance | Duration | Airlines |
|---|---|---|---|---|---|
| Novosibirsk | OVB | Russia | 220 km | 0h 53m | S7 |
| Krasnojarsk | KJA | Russia | 450 km | 1h 30m | KV |
| Krasnoyarsk | KCY | Russia | 454 km | 1h 30m | KV |
| Strezhevoy | SWT | Russia | 651 km | 2h 55m | KV |
| Nizhnevartovsk | NJC | Russia | 716 km | 1h 25m | 7R |
| Surgut | SGC | Russia | 874 km | 2h 35m | UT |
| Tyumen | TJM | Russia | 1,212 km | 3h 25m | UT |
| Irkutsk | IKT | Russia | 1,321 km | 3h 35m | UT |
| Yekaterinburg | SVX | Russia | 1,492 km | 2h 40m | WZ |
| Ulan-Ude | UUD | Russia | 1,535 km | 2h 23m | WZ |
| Chita | HTA | Russia | 1,881 km | 2h 40m | WZ |
| Moscow | DME | Russia | 2,902 km | 4h 25m | S7 |
| Moscow | SVO | Russia | 2,908 km | 4h 35m | SU |
| Moscow | VKO | Russia | 2,930 km | 4h 35m | DP |
| Saint Petersburg | LED | Russia | 3,168 km | 4h 55m | N4 |
| Adler/Sochi | AER | Russia | 3,475 km | 5h 33m | N4 |