Juba offers nonstop service to 14 destinations, served by 6 airlines.
| Destination | Code | Country | Distance | Duration | Airlines |
|---|---|---|---|---|---|
| Entebbe | EBB | Uganda | 541 km | 1h 25m | 3T, J4, UR |
| Kigali | KGL | Rwanda | 772 km | 1h 15m | J4 |
| Nairobi | NBO | Kenya | 904 km | 1h 40m | KQ |
| Addis Ababa | ADD | Ethiopia | 915 km | 2h 0m | ET |
| Khartoum | KRT | Sudan | 1,190 km | 3h 0m | 3T, J4 |
| Port Sudan | PZU | Sudan | 1,737 km | 3h 0m | J4 |
| Cairo | CAI | Egypt | 2,795 km | 4h 50m | MS |