Juba offers nonstop service to 10 destinations, served by 7 airlines.
| Destination | Code | Country | Distance | Duration | Airlines |
|---|---|---|---|---|---|
| Wau | WUU | South Sudan | 510 km | 1h 0m | |
| Malakal | MAK | South Sudan | 518 km | 1h 0m | |
| Entebbe | EBB | Uganda | 541 km | 1h 25m | 3T, UR, J4 |
| Kigali | KGL | Rwanda | 772 km | 1h 30m | J4 |
| Nairobi | NBO | Kenya | 904 km | 1h 40m | KQ |
| Addis Ababa | ADD | Ethiopia | 915 km | 2h 0m | ET |
| Khartoum | KRT | Sudan | 1,190 km | 1h 0m | |
| Port Sudan | PZU | Sudan | 1,737 km | 3h 8m | J4, 3T |
| Cairo | CAI | Egypt | 2,795 km | 4h 55m | MS |
| Istanbul | IST | Turkiye | 4,041 km | 6h 40m | TK |