Mopa Airport offers nonstop service to 39 destinations, served by 6 airlines.
| Destination | Code | Country | Distance | Duration | Airlines |
|---|---|---|---|---|---|
| Shivamogga | RQY | India | 279 km | 0h 50m | S5 |
| Pune | PNQ | India | 315 km | 1h 10m | 6E, IC |
| Mumbai | NMI | India | 369 km | 1h 0m | 6E |
| Mumbai | BOM | India | 386 km | 1h 25m | 6E, IX |
| Bengaluru | BLR | India | 499 km | 1h 20m | 6E, IX, S5 |
| Hyderabad | HYD | India | 514 km | 1h 15m | 6E, IX |
| Nanded | NDC | India | 529 km | 1h 20m | S5 |
| Agatti Island | AGX | India | 572 km | 2h 0m | IC |
| Jalgaon | JLG | India | 608 km | 1h 53m | IC |
| Diu | DIU | India | 633 km | 1h 30m | S5 |
| Chennai | MAA | India | 744 km | 1h 35m | 6E |
| Nagpur | NAG | India | 807 km | 1h 35m | 6E |
| Ahmedabad | AMD | India | 822 km | 1h 40m | 6E, S5 |
| Jaipur | JAI | India | 1,244 km | 2h 5m | 6E |
| Delhi | DEL | India | 1,458 km | 2h 40m | 6E, IX |
| Chandigarh | IXC | India | 1,681 km | 2h 40m | 6E |
| Kolkata | CCU | India | 1,712 km | 2h 50m | 6E |
| Sharjah | SHJ | United Arab Emirates | 2,184 km | 3h 10m | G9 |
| Abu Dhabi | AUH | United Arab Emirates | 2,225 km | 3h 45m | IX |
| Doha | DOH | Qatar | 2,544 km | 3h 55m | QR |