Mopa Airport offers nonstop service to 30 destinations, served by 11 airlines.
| Destination | Code | Country | Distance | Duration | Airlines |
|---|---|---|---|---|---|
| Shivamogga | RQY | India | 279 km | 0h 50m | S5 |
| Sholapur | SSE | India | 304 km | 1h 0m | IC |
| Pune | PNQ | India | 315 km | 1h 5m | 6E, SG, IC |
| Mumbai | NMI | India | 369 km | 1h 0m | 6E |
| Mumbai | BOM | India | 386 km | 1h 20m | 6E, SG, IX |
| Bengaluru | BLR | India | 499 km | 1h 20m | 6E, IX, S5 |
| Hyderabad | HYD | India | 514 km | 1h 20m | 6E, IC, IX |
| Nanded | NDC | India | 529 km | 1h 20m | S5 |
| Agatti Island | AGX | India | 572 km | 1h 50m | IC |
| Surat Gujarat | STV | India | 607 km | 1h 25m | 6E |
| Jalgaon | JLG | India | 608 km | 1h 45m | IC |
| Diu | DIU | India | 633 km | 1h 40m | S5 |
| Vadodara | BDQ | India | 733 km | 1h 25m | 6E |
| Chennai | MAA | India | 744 km | 1h 40m | 6E |
| Hirasar | HSR | India | 793 km | 1h 30m | 6E |
| Nagpur | NAG | India | 807 km | 1h 35m | 6E |
| Ahmedabad | AMD | India | 822 km | 1h 43m | 6E |
| Jaipur | JAI | India | 1,244 km | 2h 5m | 6E |
| Bhubaneswar | BBI | India | 1,360 km | 2h 10m | 6E |
| Delhi | DEL | India | 1,458 km | 2h 40m | 6E, AI, IX |
| Chandigarh | IXC | India | 1,681 km | 2h 40m | 6E |
| Kolkata | CCU | India | 1,712 km | 2h 40m | 6E |
| Muscat | MCT | Oman | 1,849 km | 3h 10m | WY |
| Sharjah | SHJ | United Arab Emirates | 2,184 km | 3h 10m | G9 |
| Doha | DOH | Qatar | 2,544 km | 3h 55m | QR |
| Almaty | ALA | Kazakhstan | 3,076 km | 5h 5m | FS |
| Astana | NQZ | Kazakhstan | 3,921 km | 5h 45m | FS |
| Novosibirsk | OVB | Russia | 4,423 km | 6h 50m | SU |
| Yekaterinburg | SVX | Russia | 4,684 km | 6h 55m | SU |
| Moscow | SVO | Russia | 5,428 km | 8h 8m | SU |